Releases: epam/Indigo
Releases · epam/Indigo
indigo-1.24.0
What's Changed
Features
- #2096 - Support retrosynthetic arrows - PNG/SVG rendering
- #2097 - Add retrosynthetic arrow import/export for cdx/cdxml formats
- #2031 - Build a data structure for a reaction tree
- #1619 - Import/export of variant monomers from IDT
- #2052 - Position pathway reaction on canvas
- #2015 - Import/Export of variant monomers from Fasta/Sequence
- #2028 - PNG image support in CDX/CDXML
- #2128 - Add Multi-tail Arrows to Pathway Reactions Loaded from RDF
- #2188 - HELM 2 support: variant monomers
- #2189 - HELM 2 support: support for SMILES
Bugfixes and improvements
- #2232 - System replace arrows of diffrent types with Open Arrow type while loading from PPTX(CDX)
- #2249 - Arrow Open Angle changes to Arrow Filled Triangle after saving and opening in CDX/CDXML
- #2120 - Export the structure for nucleotides 2-Amino-dA does not work correctly
- #2266 - Error message is wrong for missing ratio number (PEPTIDE1{(A:+C:0.1)}$$$$V2.0)
- #2300 - HELM loading doesn't work in remote version
- #2293 - Export IDT doesn't work for natural ambiguous monomers
- #2336 - Ribose sugar doesn't allow to load IDT custom mixed bases
- #2358 - Import of monomer with only one connection point (R2) doesn't work
- #2321 - Export of multi-character monomer IDs inside ambiguous monomer works wrong
- #2375 - Export to IDT doesn't work at all for mixed bases
- #2356 - Library ambiguous peptides loaded as mixtures from FASTA
- #2357 - Export to HELM doesn't work if we connect peptide TO molecule
- #2303 - Import of variant monomers from Sequence doesn't work for RNA and FASTA for RNA/DNA
- #2355 - Import of HELM with fractional ratio mixture values doesn't work - system expects integer
- #2421 - Incorrect stereo-label placement for (E) and (Z) (indigo part)
- #2417 - The layout is incorrect with retrosynthetic arrow
Full Changelog: indigo-1.23.0...indigo-1.24.0
indigo-1.24.0-rc.3
What's Changed
- #2358 - Import of monomer with only one connection point (R2) doesn't work
- #2321 - Export of multi-character monomer IDs inside ambiguous monomer works wrong
- #2341 - Save to Sequence and FASTA doesn't work for monomers loaded from HELM with inline SMILES
- #2375 - Export to IDT doesn't work at all for mixed bases
- #2356 - Library ambiguous peptides loaded as mixtures from FASTA
- #2357 - Export to HELM doesn't work if we connect peptide TO molecule
- #2318 - The reaction with retrosynthetic arrow is displayed not correct after clicking on Aromatize
- #2303 - Import of variant monomers from Sequence doesn't work for RNA and FASTA for RNA/DNA
- #2355 - Import of HELM with fractional ratio mixture values doesn't work - system expects integer
- #2337 - Export of HELM with inline SMILES contains "Mod0" instead of SMILES
Full Changelog: indigo-1.24.0-rc.2...indigo-1.24.0-rc.3
indigo-1.24.0-rc.2
What's Changed
Bugfixes and improvements
- #2300 - HELM loading doesn't work in remote version
- #2293 - Export IDT doesn't work for natural ambiguous monomers
- #2259 - When importing and exporting to/from CDX and CDXML, images are lost
- #2336 - Ribose sugar doesn't allow to load IDT custom mixed bases
- #2339 - Unable to load HELM inline SMILES sugar
- #2333 - cdxml reactions loading fails with ignore stereo
indigo-1.23.0
indigo-1.22.0
What's Changed
Features
- #1912 - Support unresolved IDT monomers (no structure, IDT only)
- #1919 - Support of unsplit nucleotides
- #1188 - HELM ver 1 scope: support multiple sequences and connection tables (import and export)
- #1188 - HELM ver 2.04 support API for ketcher
Bugfixes and improvements
- #877 - api: wasm: indigo-ketcher: prepare 2-files wasm+js package
- #1993 - Micro and macro structures connected through attachment points cannot be opened after save in CDXML format in micro mode
- #1986 - System breaks IDT export line if it is longer than 80 chars by
- #2106 - Export monomer with R2, R3, R4 APs resulted in monomer with R2, R3 if exported to mol v3000
- #2110 - The structure changes when saved in SVG/PNG formats
indigo-1.24.0-rc.1
What's Changed
- #2096 - Support retrosynthetic arrows - PNG/SVG rendering
- #2097: Add retrosynthetic arrow import/export for cdx/cdxml formats
- #2031 - Build a data structure for a reaction tree
- #1619 Import/export of variant monomers from IDT
- #2052 - Position pathway reaction on canvas
- #2015 Import/Export of variant monomers from Fasta/Sequence
- #2028 - PNG image support in CDX/CDXML
- #2232 - System replace arrows of diffrent types with Open Arrow type while loading from PPTX(CDX)
- #2128 - Add Multi-tail Arrows to Pathway Reactions Loaded from RDF
- #2244 CI/CD regress: "RNA/DNA presets loaded from FASTA/Seqeunce positioned wrong at the flex mode canvas (phosphate over sugar)
- #2249 - Arrow Open Angle changes to Arrow Filled Triangle after saving and opening in CDX/CDXML
- #2188 HELM 2 support: variant monomers
- #2259 - Preview: When importing and exporting to/from CDX and CDXML, images are lost
- #2189 HELM 2 support: support for SMILES
- #2120 Export the structure for nucleotides 2-Amino-dA does not work correctly
- #2266 Error message is wrong for missing ratio number (PEPTIDE1{(A:+C:0.1)}$$$$V2.0)
- #2287 Wrong smiles in HELM
Full Changelog: indigo-1.23.0-rc.2...indigo-1.24.0-rc.1
Indigo-1.21.0
What's Changed
Features
- #1903 - Introduce IDT alias for monomers and RNA presets in Ket format
- #1901 - Receive monomer library from Ketcher upon import/export IDT notation
- #1900 - Export of modified RNA to IDT notation (modified IDT monomers)
- #1899 - Import of modified IDT monomers
Bugsfixes and improvements
- #1979 - Preview: IDT sequence with leading or trailing spaces will not open.
- #1978 - Preview: Open an IDT file with a "" character if the "" is only between nucleotides (RNA presets or unsplit nucleotides)
- #1976 - Too slow monomer library load
- #1974 - Preview: User can save IDT with 5' phosphate but cannot open this file again.
- #1972 - Can't save KET with nameless superatom
- #1996 - Cannot open IDT with MOE sugar.
- #1960 - Fix error message in the SequenceLoader for an invalid sequence
- #1959 - Preview: Saved in the Ketcher IDT file should be opened
- #1928 - Support monomer to molecule connections type
- #1878 - The structure saved in CML format does not open
- #1843 - FASTA export: 80 chars limit
- #2000 - Exporting a CDX file to ChemDraw loses information about charge on atoms
- #1997 - Export to IDT doesn't work at all for remote indigo
- #1993 - Micro and macro structures connected through attachment points cannot be opened after save in CDXML format in micro mode
- #2004 - Errors occur when trying to save a macro structure connected to a micro structure to MOL V3000
- #1994 - Micro and macro structures connected through attachment points cannot be opened after save in CDX and Base 64CDX format in micro mode
- #1992 - Micro and macro structures connected through attachment points cannot be saved in Extended SMILES format in micro mode
- #1990 - Micro and macro structures connected through attachment points cannot be saved in CML format in micro mode
- #1984 - Error message is wrong if in case if position indicator in IDT code contradicts real position of the monomer in the chain
- #1982 - Cannot open some expected IDT.
Full Changelog: indigo-1.21.0-rc.1...indigo-1.21.0-rc.2
indigo-1.23.0-rc.1
What's Changed
Features
- #2034 Introduce variant monomers in a model
- #2029 PNG Image rendering in Indigo for SVG and PNG export
- #2144 Import/export images in KET
- #2131 Create Indigo WASM bundle with removed rendering part
Bugfixed and improvements
- #2183 Preview: PNG images aren't on the bottom layer on preview and after save to PNG and SVG formats
- #2182 Preview: Images change their positions after Indigo actions
- #2173 Preview: PNG image and elements can't be saved to PNG or SVG formats with correct position of image
- #2172 Preview: Image disappear after layout function when images are on canvas with reaction
- #2168 Update embedded images format in KET-files
- #1944 Fullerene and 3D molecules are not represented as 3D in the Miew 3D window
- #2159 WASM files are missing in npm package
- #2141 Replace common/base_c/nano* with
- #2139 Replace common/base_c/os_dir* with
- #2134 Store monomer library as API object
- #2124 UT under linux cause core dump
- #2065 Error message on incorrect monomer index could be better
Full Changelog: indigo-1.22.0-rc.2...indigo-1.23.0-rc.1
indigo-1.22.0-rc.2
What's Changed
- #2067 Separator between connection data missed
- #2060 Label for unknown monomer is wrong
- #2055 Impot of RNA (RNA1{RP}$$$$V2.0) without base doesn't work
- #2077 Export of CHEM-Nucleotide to HELM is wrong
- #2064 System establishes connection between monomers even if data is wrong
Full Changelog: indigo-1.22.0-rc.1...indigo-1.22.0-rc.2
Indigo-1.22.0-rc.1
What's Changed
- #1912 Support unresolved IDT monomers (no structure, IDT only)
- #1919 Support of unsplit nucleotides
- #877 api: wasm: indigo-ketcher: prepare 2-files wasm+js package
- #1188 HELM ver 2.04 support multiple sequences and connection tables (import and export)
- #1986 System breaks IDT export line if it is longer than 80 chars
Full Changelog: indigo-1.21.0-rc.3...indigo-1.22.0-rc.1